Publications

  1. Jima DD; Skaar DA; Planchart A; Motsinger-Reif A; Cevik SE; Park SS; Cowley M; Wright F; House J; Liu A; Jirtle RL; Hoyo C, 2022. Genomic map of candidate human imprint control regions: the imprintome.  Epigenetics.

  2. Olivia Solomon, Karen Huena, Paul Yousefi, Leanne K Küpers, Juan R González, Matthew Suderman, Sarah E Reese, Christian M Page, Olena Gruzieva, Peter Rzehak, Lu Gao, Kelly M Bakulski, Alexei Novoloaca, Catherine Allard, Irene Pappa, Maria Llambrich, Marta Vives, Dereje D Jima, et.al, 2022. Meta-analysis of epigenome-wide association studies in newborns and children show widespread sex differences in blood DNA methylation. Mutation Research/Reviews in Mutation Research.
  3. Moylan CA; Mavis AM; Jima D; Maguire R; Bashir M; Hyun J; Cabezas MN; Parish A; Niedzwiecki D; Diehl AM; Murphy SK; Abdelmalek MF; Hoyo C, 2022. Alterations in DNA methylation associate with fatty liver and metabolic abnormalities in a multi-ethnic cohort of pre-teenage children.  Epigenetics.
  4. Baptissart M; Bradish CM; Jones BS; Walsh E; Tehrani J; Marrero-Colon V; Mehta S; Jima DD; Oh SH; Diehl AM; Fougeray T; Guillou H; Cowley M, 2022. Zac1 and the Imprinted Gene Network program juvenile NAFLD in response to maternal metabolic syndrome.  Hepatology.

  5. Shafiee-Kermani F; Carney ST; Jima D; Utin UC; Farrar LB; Oputa MO; Hines MR; Kinyamu HK; Trotter KW; Archer TK; Hoyo C; Koller BH; Freedland SJ; Grant DJ, 2021. Expression of UDP Glucuronosyltransferases 2B15 and 2B17 is associated with methylation status in prostate cancer cells.  Epigenetics 16(3):289-299

  6. Hudson KM; Shiver E; Yu J; Mehta S; Jima DD; Kane MA; Patisaul HB; Cowley M, 2021. Transcriptomic, proteomic, and metabolomic analyses identify candidate pathways linking maternal cadmium exposure to altered neurodevelopment and behavior.  Sci Rep 11(1):16302

  7. Bosire C; Vidal AC; Smith JS; Jima D; Huang Z; Skaar D; Valea F; Bentley R; Gradison M; Yarnall KSH; Ford A; Overcash F; Murphy SK; Hoyo C, 2021. Association between PEG3 DNA methylation and high-grade cervical intraepithelial neoplasia.  Infect Agent Cancer 16(1):42

  8. Vehmeijer FOL; Küpers LK; Sharp GC; Salas LA; Lent S; Jima DD; Tindula G; Reese S; Qi C; Gruzieva O; Page C; Rezwan FI; Melton PE; Nohr E; Escaramís G; Rzehak P; Heiskala A; Gong T; Tuominen ST; Gao L; Ross JP; Starling AP; Holloway JW; Yousefi P; Aasvang GM; Beilin LJ; Bergström A; Binder E; Chatzi L; Corpeleijn E; Czamara D; Eskenazi B; Ewart S; Ferre N; Grote V; Gruszfeld D; Håberg SE; Hoyo C; Huen K; Karlsson R; Kull I; Langhendries JP; Lepeule J; Magnus MC; Maguire RL; Molloy PL; Monnereau C; Mori TA; Oken E; Räikkönen K; Rifas-Shiman S; Ruiz-Arenas C; Sebert S; Ullemar V; Verduci E; Vonk JM; Xu CJ; Yang IV; Zhang H; Zhang W; Karmaus W; Dabelea D; Muhlhausler BS; Breton CV; Lahti J; Almqvist C; Jarvelin MR; Koletzko B; Vrijheid M; Sørensen TIA; Huang RC; Arshad SH; Nystad W; Melén E; Koppelman GH; London SJ; Holland N; Bustamante M; Murphy SK; Hivert MF; Baccarelli A; Relton CL; Snieder H; Jaddoe VWV; Felix JF, 2020. DNA methylation and body mass index from birth to adolescence: meta-analyses of epigenome-wide association studies. Genome Med 12(1):105
  9. Neumann A; Walton E; Alemany S; Cecil C; González JR; Jima DD; Lahti J; Tuominen ST; Barker ED; Binder E; Caramaschi D; Carracedo Á; Czamara D; Evandt J; Felix JF; Fuemmeler BF; Gutzkow KB; Hoyo C; Julvez J; Kajantie E; Laivuori H; Maguire R; Maitre L; Murphy SK; Murcia M; Villa PM; Sharp G; Sunyer J; Raikkönen K; Bakermans-Kranenburg M; IJzendoorn MV; Guxens M; Relton CL; Tiemeier H, 2020. Association between DNA methylation and ADHD symptoms from birth to school age: a prospective meta-analysis. Transl Psychiatry 10(1):398
  10. Chou H; Jima DD; Funk DH; Jackson JK; Sweeney BW; Buchwalter DB, 2020. Transcriptomic and life history responses of the mayfly Neocloeon triangulifer to chronic diel thermal challenge. Sci Rep 10(1):19119
  11. Kunth MM; Mahapatra D; Jima D; Wan D; Hammock BD; Law M; Kullman SW, 2020. Vitamin D deficiency serves as a precursor to tunted growth and central adiposity in Zebrafish. Sci Rep 10(1):16032
  12. Shafiee-Kermani F; Carney ST; Jima D; Utin UC; Farrar LB; Oputa MO; Hines MR; Kinyamu HK; Trotter KW; Archer TK; Hoyo C; Koller BH; Freedland SJ; Grant DJ, 2020. Expression of UDP Glucuronosyltransferases 2B15 and 2B17 Is Associated with Methylation Status in Prostate Cancer cells.  Epigenetics.
  13. Rock KD; St Armour G; Horman B; Phillips A; Ruis M; Stewart AK; Jima D; Muddiman DC; Stapleton HM; Patisaul HB, 2020. Effects of Prenatal Exposure to a Mixture of Organophosphate Flame Retardants on Placental Gene Expression and Serotonergic Innervation in the Fetal Rat Brain.  Toxicol Sci.

  14. Etheridge AS; Gallins PJ; Jima D; Broadaway KA; Ratain MJ; Schuetz E; Schadt E; Schroder A; Molony C; Zhou Y; Mohlke KL; Wright FA; Innocenti F, 2020. A new liver eQTL map from 1,183 individuals provides evidence for novel eQTLs of drug response, metabolic and sex-biased phenotypes.  Clin Pharmacol Ther.

  15. Küpers LK, Monnereau C, Sharp GC, Yousefi P, Salas LA, Ghantous A, Page CM, Reese SE, Wilcox AJ, Czamara D, Starling AP, Novoloaca A, Lent S, Roy R, Hoyo C, Breton CV, Allard C, Just AC, Bakulski KM, Holloway JW, Everson TM, Xu CJ, Huang RC, van der Plaat DA, Wielscher M, Merid SK, Ullemar V, Rezwan FI, Lahti J, van Dongen J, Langie SAS, Richardson TG, Magnus MC, Nohr EA, Xu Z, Duijts L, Zhao S, Zhang W, Plusquin M, DeMeo DL, Solomon O, Heimovaara JH, Jima DD, Gao L, Bustamante M, Perron P, Wright RO, Hertz-Picciotto I, Zhang H, Karagas MR, Gehring U, Marsit CJ, Beilin LJ, Vonk JM, Jarvelin MR, Bergström A, Örtqvist AK, Ewart S, Villa PM, Moore SE, Willemsen G, Standaert ARL, Håberg SE, Sørensen TIA, Taylor JA, Räikkönen K, Yang IV, Kechris K, Nawrot TS, Silver MJ, Gong YY, Richiardi L, Kogevinas M, Litonjua AA, Eskenazi B, Huen K, Mbarek H, Maguire RL, Dwyer T, Vrijheid M, Bouchard L, Baccarelli AA, Croen LA, Karmaus W, Anderson D, de Vries M, Sebert S, Kere J, Karlsson R, Arshad SH, Hämäläinen E, Routledge MN, Boomsma DI, Feinberg AP, Newschaffer CJ, Govarts E, Moisse M, Fallin MD, Melén E, Prentice AM, Kajantie E, Almqvist C, Oken E, Dabelea D, Boezen HM, Melton PE, Wright RJ, Koppelman GH, Trevisi L, Hivert MF, Sunyer J, Munthe-Kaas MC, Murphy SK, Corpeleijn E, Wiemels J, Holland N, Herceg Z, Binder EB, Davey Smith G, Jaddoe VWV, Lie RT, Nystad W, London SJ, Lawlor DA, Relton CL, Snieder H, Felix JF. Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight. Nat Commun. 2019 Apr 23;10(1):1893. doi: 10.1038/s41467-019-09671-3.
  16. Martin CL; Jima D; Sharp GC; McCullough LE; Park SS; Gowdy KM; Skaar D; Cowley M; Maguire RL; Fuemmeler B; Collier D; Relton CL; Murphy SK; Hoyo C, 2019. Maternal pre-pregnancy obesity, offspring cord blood DNA methylation, and offspring cardiometabolic health in early childhood: an epigenome-wide association study. Epigenetics.
  17. Tam HW; Hall JR; Messenger ZJ; Jima DD; House JS; Linder K; Smart RC, 2019. C/EBPβ Suppresses Keratinocyte Autonomous Type 1 IFN Response and p53 to Increase Cell Survival and Susceptibility to UVB-induced Skin Cancer.  Carcinogenesis.
  18. Reese SE; Xu CJ; den Dekker HT; Lee MK; Sikdar S; Ruiz-Arenas C; Merid SK; Rezwan FI; Page CM; Ullemar V; Melton PE; Oh SS; Yang IV; Burrows K; Söderhäll C; Jima DD; Gao L; Arathimos R; Küpers LK; Wielscher M; Rzehak P; Lahti J; Laprise C; Madore AM; Ward J; Bennett BD; Wang T; Bell DA; Vonk JM; Håberg SE; Zhao S; Karlsson R; Hollams E; Hu D; Richards AJ; Bergström A; Sharp GC; Felix JF; Bustamante M; Gruzieva O; Maguire RL; Gilliland F; Baïz N; Nohr EA; Corpeleijn E; Sebert S; Karmaus W; Grote V; Kajantie E; Magnus MC; Örtqvist AK; Eng C; Liu AH; Kull I; Jaddoe VWV; Sunyer J; Kere J; Hoyo C; Annesi-Maesano I; Arshad SH; Koletzko B; Brunekreef B; Binder EB; Räikkönen K; Reischl E; Holloway JW; Jarvelin MR; Snieder H; Kazmi N; Breton CV; Murphy SK; Pershagen G; Anto JM; Relton CL; Schwartz DA; Burchard EG; Huang RC; Nystad W; Almqvist C; Henderson AJ; Melén E; Duijts L; Koppelman GH; London SJ, 2018. Epigenome-wide Meta-analysis of DNA Methylation and Childhood Asthma. J Allergy Clin Immunol.
  19. Messenger ZJ; Hall JR; Jima DD; House JS; Tam HW; Tokarz DA; Smart RC, 2018. C/EBPβ deletion in oncogenic Ras skin tumors is a synthetic lethal event.  Cell Death Dis 9(11):1054
  20. Frayling TM; Beaumont RN; Jones SE; Yaghootkar H; Tuke MA; Ruth KS; Casanova F; West B; Locke J; Sharp S; Ji Y; Thompson W; Harrison J; Etheridge AS; Gallins PJ; Jima D; Wright F; Zhou Y; Innocenti F; Lindgren CM; Grarup N; Murray A; Freathy RM; Weedon MN; Tyrrell J; Wood AR, 2018. A Common Allele in FGF21 Associated with Sugar Intake Is Associated with Body Shape, Lower Total Body-Fat Percentage, and Higher Blood Pressure.  Cell Rep 23(2):327-336
  21. Hsuan Chou, Wimal Pathmasiri, Jocelin Deese-spruill, Susan J. Sumner, Dereje D. Jima, David H. Funk, John K. Jackson, Bernard W. Sweeney and David B. Buchwalter, 2018. The Good, the Bad, and the Lethal: Gene Expression and Metabolomics Reveal Physiological Mechanisms Underlying Chronic Thermal Effects in Mayfly Larvae (Neocloeon triangulifer).  Front. Ecol. Evol. 23 March 2018
  22. Cowley M; Skaar DA; Jima DD; Maguire RL; Hudson KM; Park SS; Sorrow P; Hoyo C, 2018. Effects of Cadmium Exposure on DNA Methylation at Imprinting Control Regions and Genome-Wide in Mothers and Newborn Children.  Environ Health Perspect 126(3):037003
  23. Li G; Jima D; Wright FA; Nobel AB, 2018. HT-eQTL: integrative expression quantitative trait loci analysis in a large number of human tissues.  BMC Bioinformatics 19(1):95
  24. Baldwin KR; Horman B; Phillips AL; McRitchie SL; Watson S; Deese-Spruill J; Jima D; Sumner S; Stapleton H; Patisaul H, 2018. EDC IMPACT: Molecular effects of developmental FM 550 exposure in Wistar rat placenta and fetal forebrain.  Endocr Connect.

  25. Lee S; Ward TJ; Jima DD; Parsons C; Kathariou S, 2017. The Arsenic Resistance-Associated Listeria Genomic Island LGI2 Exhibits Sequence and Integration Site Diversity and a Propensity for Three Listeria monocytogenes Clones with Enhanced Virulence.  Appl Environ Microbiol 83.

  26. Dutta V; Lee S; Ward TJ; Orwig N; Altermann E; Jima DD; Parsons C; Kathariou S, 2017. Genome Sequences of Listeria monocytogenes Strains with Resistance to Arsenic.  Genome Announc 5.

  27. Grossman L; Chang C; Dai J; Nikitin PA; Jima DD; Dave SS; Luftig MA, 2017. Epstein-Barr Virus Induces Adhesion Receptor CD226 (DNAM-1) Expression during Primary B-Cell Transformation into Lymphoblastoid Cell Lines.  mSphere 2.

  28. Zhou YH; Cichocki JA; Soldatow VY; Scholl EH; Gallins PJ; Jima D; Yoo HS; Chiu WA; Wright FA; Rusyn I, 2017. Editor’s Highlight: Comparative Dose-Response Analysis of Liver and Kidney Transcriptomic Effects of Trichloroethylene and Tetrachloroethylene in B6C3F1 Mouse.  Toxicol Sci 160(1):95-110

  29. Tokarz DA; Heffelfinger AK; Jima DD; Gerlach J; Shah RN; Rodriguez-Nunez I; Kortum AN; Fletcher AA; Nordone SK; Law JM; Heber S; Yoder JA, 2017. Disruption of Trim9 function abrogates macrophage motility in vivo.  J Leukoc Biol102(6):1371-1380

  30. House JS; Grimm FA; Jima DD; Zhou YH; Rusyn I; Wright FA, 2017. A Pipeline for High-Throughput Concentration Response Modeling of Gene Expression for Toxicogenomics.  Front Genet 8:168

  31. Reaves DK; Hoadley KA; Fagan-Solis KD; Jima DD; Bereman M; Thorpe L; Hicks J; McDonald D; Troester MA; Perou CM; Fleming JM, 2017. Nuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis.  Mol Cancer Res 15(2):165-178

  32. Arambula SE; Jima D; Patisaul HB, 2017. Prenatal bisphenol A (BPA) exposure alters the transcriptome of the neonate rat amygdala in a sex-specific manner: a CLARITY-BPA consortium study.  Neurotoxicology.

  33. Felix JF; Joubert BR; Baccarelli AA; Sharp GC; Almqvist C; Annesi-Maesano I; Arshad H; Baïz N; Bakermans-Kranenburg MJ; Bakulski KM; Binder EB; Bouchard L; Breton CV; Brunekreef B; Brunst KJ; Burchard EG; Bustamante M; Chatzi L; Cheng Munthe-Kaas M; Corpeleijn E; Czamara D; Dabelea D; Davey Smith G; De Boever P; Duijts L; Dwyer T; Eng C; Eskenazi B; Everson TM; Falahi F; Fallin MD; Farchi S; Fernandez MF; Gao L; Gaunt TR; Ghantous A; Gillman MW; Gonseth S; Grote V; Gruzieva O; Håberg SE; Herceg Z; Hivert MF; Holland N; Holloway JW; Hoyo C; Hu D; Huang RC; Huen K; Järvelin MR; Jima DD; Just AC; Karagas MR; Karlsson R; Karmaus W; Kechris KJ; Kere J; Kogevinas M; Koletzko B; Koppelman GH; Küpers LK; Ladd-Acosta C; Lahti J; Lambrechts N; Langie SAS; Lie RT; Liu AH; Magnus MC; Magnus P; Maguire RL; Marsit CJ; McArdle W; Melén E; Melton P; Murphy SK; Nawrot TS; Nisticò L; Nohr EA; Nordlund B; Nystad W; Oh SS; Oken E; Page CM; Perron P; Pershagen G; Pizzi C; Plusquin M; Raikkonen K; Reese SE; Reischl E; Richiardi L; Ring S; Roy RP; Rzehak P; Schoeters G; Schwartz DA; Sebert S; Snieder H; Sørensen TIA; Starling AP; Sunyer J; Taylor JA; Tiemeier H; Ullemar V; Vafeiadi M; Van Ijzendoorn MH; Vonk JM; Vriens A; Vrijheid M; Wang P; Wiemels JL; Wilcox AJ; Wright RJ; Xu CJ; Xu Z; Yang IV; Yousefi P; Zhang H; Zhang W; Zhao S; Agha G; Relton CL; Jaddoe VWV; London SJ, 2017. Cohort Profile: Pregnancy And Childhood Epigenetics (PACE) Consortium.  Int J Epidemiol.

  34. Maina AN; Luce-Fedrow A; Omulo S; Hang J; Chan TC; Ade F; Jima DD; Ogola E; Ge H; Breiman RF; Njenga MK; Richards AL, 2016. Isolation and characterization of a novel Rickettsia species (Rickettsia asembonensis sp. nov.) obtained from cat fleas (Ctenocephalides felis).  Int J Syst Evol Microbiol 66(11):4512-4517

  35. Hang J; Klein TA; Kim HC; Yang Y; Jima DD; Richardson JH; Jarman RG, 2016. Genome Sequences of Five Arboviruses in Field-Captured Mosquitoes in a Unique Rural Environment of South Korea.  Genome Announc 4.

  36. Dutta V; Lee S; Ward TJ; Orwig N; Altermann E; Jima D; Parsons C; Kathariou S, 2016. Draft Genome Sequences of Two Historical Listeria monocytogenes Strains from Human Listeriosis Cases in 1933.  Genome Announc 4.

  37. Nye MD; King KE; Darrah TH; Maguire R; Jima DD; Huang Z; Mendez MA; Fry RC; Jirtle RL; Murphy SK; Hoyo C, 2016. Maternal blood lead concentrations, DNA methylation of MEG3 DMR regulating the DLK1/MEG3 imprinted domain and early growth in a multiethnic cohort.  Environ Epigenet 2.

  38. Jima DD; Luce-Fedrow A; Yang Y; Maina AN; Snesrud EC; Otiang E; Njenga K; Jarman RG; Richards AL; Hang J, 2015. Whole-Genome Sequence of “Candidatus Rickettsia asemboensis” Strain NMRCii, Isolated from Fleas of Western Kenya. Genome Announc 3.

  39. Doss JF; Corcoran DL; Jima DD; Telen MJ; Dave SS; Chi JT, 2015. A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes.  BMC Genomics 16:952

  40. Kilianski A; Carcel P; Yao S; Roth P; Schulte J; Donarum GB; Fochler ET; Hill JM; Liem AT; Wiley MR; Ladner JT; Pfeffer BP; Elliot O; Petrosov A; Jima DD; Vallard TG; Melendrez MC; Skowronski E; Quan PL; Lipkin WI; Gibbons HS; Hirschberg DL; Palacios GF; Rosenzweig CN, 2015. Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform.  BMC Bioinformatics 16:416

  41. Zhang J; Jima D; Moffitt AB; Liu Q; Czader M; Hsi ED; Fedoriw Y; Dunphy CH; Richards KL; Gill JI; Sun Z; Love C; Scotland P; Lock E; Levy S; Hsu DS; Dunson D; Dave SS, 2014. The genomic landscape of mantle cell lymphoma is related to the epigenetically determined chromatin state of normal B cells.  Blood 123(19):2988-96

  42. Zhang J; Grubor V; Love CL; Banerjee A; Richards KL; Mieczkowski PA; Dunphy C; Choi W; Au WY; Srivastava G; Lugar PL; Rizzieri DA; Lagoo AS; Bernal-Mizrachi L; Mann KP; Flowers C; Naresh K; Evens A; Gordon LI; Czader M; Gill JI; Hsi ED; Liu Q; Fan A; Walsh K; Jima D; Smith LL; Johnson AJ; Byrd JC; Luftig MA; Ni T; Zhu J; Chadburn A; Levy S; Dunson D; Dave SS, 2013. Genetic heterogeneity of diffuse large B-cell lymphoma.  Proc Natl Acad Sci U S A 110(4):1398-403

  43. Walsh K; McKinney MS; Love C; Liu Q; Fan A; Patel A; Smith J; Beaven A; Jima DD; Dave SS, 2013. PAK1 mediates resistance to PI3K inhibition in lymphomas.  Clin Cancer Res 19(5):1106-15

  44. Forte E; Salinas RE; Chang C; Zhou T; Linnstaedt SD; Gottwein E; Jacobs C; Jima D; Li QJ; Dave SS; Luftig MA, 2012. The Epstein-Barr virus (EBV)-induced tumor suppressor microRNA MiR-34a is growth promoting in EBV-infected B cells.  J Virol 86(12):6889-98

  45. Love C; Sun Z; Jima D; Li G; Zhang J; Miles R; Richards KL; Dunphy CH; Choi WW; Srivastava G; Lugar PL; Rizzieri DA; Lagoo AS; Bernal-Mizrachi L; Mann KP; Flowers CR; Naresh KN; Evens AM; Chadburn A; Gordon LI; Czader MB; Gill JI; Hsi ED; Greenough A; Moffitt AB; McKinney M; Banerjee A; Grubor V; Levy S; Dunson DB; Dave SS, 2012. The genetic landscape of mutations in Burkitt lymphoma.  Nat Genet 44(12):1321-5

  46. Jima DD; Zhang J; Jacobs C; Richards KL; Dunphy CH; Choi WW; Au WY; Srivastava G; Czader MB; Rizzieri DA; Lagoo AS; Lugar PL; Mann KP; Flowers CR; Bernal-Mizrachi L; Naresh KN; Evens AM; Gordon LI; Luftig M; Friedman DR; Weinberg JB; Thompson MA; Gill JI; Liu Q; How T; Grubor V; Gao Y; Patel A; Wu H; Zhu J; Blobe GC; Lipsky PE; Chadburn A; Dave SS, 2010. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs.  Blood 116(23):e118-27

  47. Longo NS; Lugar PL; Yavuz S; Zhang W; Krijger PH; Russ DE; Jima DD; Dave SS; Grammer AC; Lipsky PE, 2009. Analysis of somatic hypermutation in X-linked hyper-IgM syndrome shows specific deficiencies in mutational targeting.  Blood113(16):3706-15

  48. Jima DD; Shah RN; Orcutt TM; Joshi D; Law JM; Litman GW; Trede NS; Yoder JA, 2009. Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity.  Mol Immunol 46(7):1505-16

  49. Zhang J; Jima DD; Jacobs C; Fischer R; Gottwein E; Huang G; Lugar PL; Lagoo AS; Rizzieri DA; Friedman DR; Weinberg JB; Lipsky PE; Dave SS, 2009. Patterns of microRNA expression characterize stages of human B-cell differentiation.  Blood113(19):4586-94

References

1.

Grossman L1, Chang C1, Dai J1, Nikitin PA1, Jima DD2, Dave SS3, Luftig MA1. Epstein-Barr Virus Induces Adhesion Receptor CD226 (DNAM-1) Expression during Primary B-Cell Transformation into Lymphoblastoid Cell Lines. mSphere. 2017 Nov 29;2(6). PMID: 29202043. [PubMed] [Read by QxMD]

2.

House JS1,2, Grimm FA3, Jima DD1,2, Zhou YH1,4, Rusyn I3, Wright FA1,4,5. A Pipeline for High-Throughput Concentration Response Modeling of Gene Expression for Toxicogenomics. Front Genet. 2017 Nov 1;8:168. PMID: 29163636. [PubMed] [Read by QxMD]

4.

Felix JF1,2, Joubert BR3, Baccarelli AA4, Sharp GC5,6, Almqvist C7,8, Annesi-Maesano I9, Arshad H10, Baïz N9, Bakermans-Kranenburg MJ11, Bakulski KM12, Binder EB13,14, Bouchard L15,16, Breton CV17, Brunekreef B18,19, Brunst KJ20,21, Burchard EG22,23, Bustamante M24,25,26,27, Chatzi L17,18, Cheng Munthe-Kaas M28,29, Corpeleijn E30, Czamara D13, Dabelea D31,32,33, Davey Smith G5,6, De Boever P34,35, Duijts L1,32,2, Dwyer T36, Eng C22, Eskenazi B37, Everson TM38, Falahi F30, Fallin MD39,40, Farchi S41, Fernandez MF27,42, Gao L17, Gaunt TR5,6, Ghantous A43, Gillman MW44,45, Gonseth S46, Grote V47, Gruzieva O48, Håberg SE29, Herceg Z43, Hivert MF44,49,50, Holland N37,51, Holloway JW52, Hoyo C53,54, Hu D22, Huang RC55, Huen K51, Järvelin MR56,57,58, Jima DD54,59, Just AC60,61, Karagas MR62,63, Karlsson R7, Karmaus W64, Kechris KJ65, Kere J66, Kogevinas M24,26,67,68, Koletzko B47, Koppelman GH69, Küpers LK5,6,30, Ladd-Acosta C40,70, Lahti J71,72, Lambrechts N34, Langie SAS34,35, Lie RT73, Liu AH32,74, Magnus MC5,6,75, Magnus P29, Maguire RL53,76, Marsit CJ38, McArdle W6, Melén E48,77,78, Melton P79, Murphy SK80, Nawrot TS81,82, Nisticò L83, Nohr EA84, Nordlund B7,8, Nystad W29, Oh SS22, Oken E44,45, Page CM29, Perron P49, Pershagen G48,78, Pizzi C85, Plusquin M81,86, Raikkonen K71, Reese SE3, Reischl E87, Richiardi L85,88, Ring S5,6, Roy RP89,90, Rzehak P4, Schoeters G7,34,91, Schwartz DA7,92, Sebert S7,56,57, Snieder H2, Sørensen TIA5,93,94, Starling AP31,33, Sunyer J24,26,27,68, Taylor JA95, Tiemeier H1,96,97, Ullemar V7, Vafeiadi M98, Van Ijzendoorn MH11,99, Vonk JM100, Vriens A81, Vrijheid M24,26,27, Wang P101,102, Wiemels JL103,104, Wilcox AJ95, Wright RJ105,106, Xu CJ107,108, Xu Z95, Yang IV31,109, Yousefi P51, Zhang H64, Zhang W33,65, Zhao S3, Agha G4, Relton CL5,6, Jaddoe VWV1,32,2, London SJ3. Cohort Profile: Pregnancy And Childhood Epigenetics (PACE) Consortium. Int J Epidemiol. 2017 Sep 13. PMID: 29025028. [PubMed] [Read by QxMD]

5.

Tokarz DA1, Heffelfinger AK1, Jima DD1,2,3, Gerlach J1, Shah RN1, Rodriguez-Nunez I1, Kortum AN1, Fletcher AA1, Nordone SK1,4, Law JM4,5, Heber S6, Yoder JA7,2,4. Disruption of Trim9 function abrogates macrophage motility in vivo. J Leukoc Biol. 2017 Dec;102(6):1371-1380. PMID: 29021367. [PubMed] [Read by QxMD]

6.

Zhou YH1,2, Cichocki JA3, Soldatow VY4, Scholl EH2, Gallins PJ2, Jima D2, Yoo HS4, Chiu WA3, Wright FA1,2,5, Rusyn I3. Editor’s Highlight: Comparative Dose-Response Analysis of Liver and Kidney Transcriptomic Effects of Trichloroethylene and Tetrachloroethylene in B6C3F1 Mouse. Toxicol Sci. 2017 Nov 1;160(1):95-110. PMID: 28973375. [PubMed] [Read by QxMD]

8.

Dutta V1, Lee S2, Ward TJ3, Orwig N3, Altermann E4,5, Jima DD6,7, Parsons C2, Kathariou S2. Genome Sequences of Listeria monocytogenes Strains with Resistance to Arsenic. Genome Announc. 2017 May 11;5(19). PMID: 28495780. [PubMed] [Read by QxMD]

9.

Nye MD1, King KE2, Darrah TH3, Maguire R4, Jima DD4, Huang Z5, Mendez MA6, Fry RC7, Jirtle RL4, Murphy SK5, Hoyo C4. Maternal blood lead concentrations, DNA methylation of MEG3 DMR regulating the DLK1/MEG3 imprinted domain and early growth in a multiethnic cohort. Environ Epigenet. 2016;2(1). PMID: 28123784. [PubMed] [Read by QxMD]

10.

Dutta V1, Lee S2, Ward TJ3, Orwig N3, Altermann E4,5, Jima D6,7, Parsons C2, Kathariou S2. Draft Genome Sequences of Two Historical Listeria monocytogenes Strains from Human Listeriosis Cases in 1933. Genome Announc. 2016 Dec 8;4(6). PMID: 27932656. [PubMed] [Read by QxMD]

11.

Reaves DK1,2, Hoadley KA2,3, Fagan-Solis KD1,2, Jima DD4, Bereman M4, Thorpe L1,2, Hicks J1,2, McDonald D1,2, Troester MA2,5, Perou CM2,3, Fleming JM6,2,4. Nuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis. Mol Cancer Res. 2017 Feb;15(2):165-178. PMID: 27856957. [PubMed] [Read by QxMD]

12.

Maina AN1, Luce-Fedrow A2, Omulo S3, Hang J4, Chan TC1, Ade F3, Jima DD4, Ogola E3, Ge H1, Breiman RF5, Njenga MK3, Richards AL1. Isolation and characterization of a novel Rickettsia species (Rickettsia asembonensis sp. nov.) obtained from cat fleas (Ctenocephalides felis). Int J Syst Evol Microbiol. 2016 Nov;66(11):4512-4517. PMID: 27506201. [PubMed] [Read by QxMD]

13.

Hang J1, Klein TA2, Kim HC3, Yang Y4, Jima DD4, Richardson JH5, Jarman RG4. Genome Sequences of Five Arboviruses in Field-Captured Mosquitoes in a Unique Rural Environment of South Korea. Genome Announc. 2016 Jan 28;4(1). PMID: 26823588. [PubMed] [Read by QxMD]

14.

Kilianski A1, Carcel P2, Yao S3,4, Roth P5,6, Schulte J7, Donarum GB8, Fochler ET9, Hill JM10,11, Liem AT12,13, Wiley MR14, Ladner JT15, Pfeffer BP16, Elliot O17, Petrosov A18, Jima DD19, Vallard TG20, Melendrez MC21, Skowronski E22, Quan PL23, Lipkin WI24, Gibbons HS25, Hirschberg DL26,27, Palacios GF28, Rosenzweig CN29. Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform. BMC Bioinformatics. 2015 Dec 29;16:416. PMID: 26714571. [PubMed] [Read by QxMD]

15.

Doss JF1,2, Corcoran DL3, Jima DD4,5, Telen MJ6, Dave SS7,8, Chi JT9,10. A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes. BMC Genomics. 2015 Nov 16;16:952. PMID: 26573221. [PubMed] [Read by QxMD]

16.

Jima DD1, Luce-Fedrow A2, Yang Y1, Maina AN2, Snesrud EC3, Otiang E4, Njenga K4, Jarman RG1, Richards AL5, Hang J6. Whole-Genome Sequence of “Candidatus Rickettsia asemboensis” Strain NMRCii, Isolated from Fleas of Western Kenya. Genome Announc. 2015 Mar 12;3(2). PMID: 25767219. [PubMed] [Read by QxMD]

17.

Zhang J1, Jima D, Moffitt AB, Liu Q, Czader M, Hsi ED, Fedoriw Y, Dunphy CH, Richards KL, Gill JI, Sun Z, Love C, Scotland P, Lock E, Levy S, Hsu DS, Dunson D, Dave SS. The genomic landscape of mantle cell lymphoma is related to the epigenetically determined chromatin state of normal B cells. Blood. 2014 May 8;123(19):2988-96. PMID: 24682267. [PubMed] [Read by QxMD]

18.

Walsh K1, McKinney MS, Love C, Liu Q, Fan A, Patel A, Smith J, Beaven A, Jima DD, Dave SS. PAK1 mediates resistance to PI3K inhibition in lymphomas. Clin Cancer Res. 2013 Mar 1;19(5):1106-15. PMID: 23300274. [PubMed] [Read by QxMD]

19.

Zhang J1, Grubor V, Love CL, Banerjee A, Richards KL, Mieczkowski PA, Dunphy C, Choi W, Au WY, Srivastava G, Lugar PL, Rizzieri DA, Lagoo AS, Bernal-Mizrachi L, Mann KP, Flowers C, Naresh K, Evens A, Gordon LI, Czader M, Gill JI, Hsi ED, Liu Q, Fan A, Walsh K, Jima D, Smith LL, Johnson AJ, Byrd JC, Luftig MA, Ni T, Zhu J, Chadburn A, Levy S, Dunson D, Dave SS. Genetic heterogeneity of diffuse large B-cell lymphoma. Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1398-403. PMID: 23292937. [PubMed] [Read by QxMD]

20.

Love C1, Sun Z, Jima D, Li G, Zhang J, Miles R, Richards KL, Dunphy CH, Choi WW, Srivastava G, Lugar PL, Rizzieri DA, Lagoo AS, Bernal-Mizrachi L, Mann KP, Flowers CR, Naresh KN, Evens AM, Chadburn A, Gordon LI, Czader MB, Gill JI, Hsi ED, Greenough A, Moffitt AB, McKinney M, Banerjee A, Grubor V, Levy S, Dunson DB, Dave SS. The genetic landscape of mutations in Burkitt lymphoma. Nat Genet. 2012 Dec;44(12):1321-5. PMID: 23143597. [PubMed] [Read by QxMD]

21.

Forte E1, Salinas RE, Chang C, Zhou T, Linnstaedt SD, Gottwein E, Jacobs C, Jima D, Li QJ, Dave SS, Luftig MA. The Epstein-Barr virus (EBV)-induced tumor suppressor microRNA MiR-34a is growth promoting in EBV-infected B cells. J Virol. 2012 Jun;86(12):6889-98. PMID: 22496226. [PubMed] [Read by QxMD]

22.

Jima DD1, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Liu Q, How T, Grubor V, Gao Y, Patel A, Wu H, Zhu J, Blobe GC, Lipsky PE, Chadburn A, Dave SS; Hematologic Malignancies Research Consortium. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. Blood. 2010 Dec 2;116(23):e118-27. PMID: 20733160. [PubMed] [Read by QxMD]

23.

Zhang J1, Jima DD, Jacobs C, Fischer R, Gottwein E, Huang G, Lugar PL, Lagoo AS, Rizzieri DA, Friedman DR, Weinberg JB, Lipsky PE, Dave SS. Patterns of microRNA expression characterize stages of human B-cell differentiation. Blood. 2009 May 7;113(19):4586-94. PMID: 19202128. [PubMed] [Read by QxMD]

24.

Jima DD1, Shah RN, Orcutt TM, Joshi D, Law JM, Litman GW, Trede NS, Yoder JA. Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity. Mol Immunol. 2009 Apr;46(7):1505-16. PMID: 19200601. [PubMed] [Read by QxMD]

25.

Longo NS1, Lugar PL, Yavuz S, Zhang W, Krijger PH, Russ DE, Jima DD, Dave SS, Grammer AC, Lipsky PE. Analysis of somatic hypermutation in X-linked hyper-IgM syndrome shows specific deficiencies in mutational targeting. Blood. 2009 Apr 16;113(16):3706-15. PMID: 19023113. [PubMed] [Read by QxMD]