Publications

  1. Martin CL; Jima D; Sharp GC; McCullough LE; Park SS; Gowdy KM; Skaar D; Cowley M; Maguire RL; Fuemmeler B; Collier D; Relton CL; Murphy SK; Hoyo C, 2019. Maternal pre-pregnancy obesity, offspring cord blood DNA methylation, and offspring cardiometabolic health in early childhood: an epigenome-wide association study. Epigenetics.
  2. Tam HW; Hall JR; Messenger ZJ; Jima DD; House JS; Linder K; Smart RC, 2019. C/EBPβ Suppresses Keratinocyte Autonomous Type 1 IFN Response and p53 to Increase Cell Survival and Susceptibility to UVB-induced Skin Cancer.  Carcinogenesis.
  3. Reese SE; Xu CJ; den Dekker HT; Lee MK; Sikdar S; Ruiz-Arenas C; Merid SK; Rezwan FI; Page CM; Ullemar V; Melton PE; Oh SS; Yang IV; Burrows K; Söderhäll C; Jima DD; Gao L; Arathimos R; Küpers LK; Wielscher M; Rzehak P; Lahti J; Laprise C; Madore AM; Ward J; Bennett BD; Wang T; Bell DA; Vonk JM; Håberg SE; Zhao S; Karlsson R; Hollams E; Hu D; Richards AJ; Bergström A; Sharp GC; Felix JF; Bustamante M; Gruzieva O; Maguire RL; Gilliland F; Baïz N; Nohr EA; Corpeleijn E; Sebert S; Karmaus W; Grote V; Kajantie E; Magnus MC; Örtqvist AK; Eng C; Liu AH; Kull I; Jaddoe VWV; Sunyer J; Kere J; Hoyo C; Annesi-Maesano I; Arshad SH; Koletzko B; Brunekreef B; Binder EB; Räikkönen K; Reischl E; Holloway JW; Jarvelin MR; Snieder H; Kazmi N; Breton CV; Murphy SK; Pershagen G; Anto JM; Relton CL; Schwartz DA; Burchard EG; Huang RC; Nystad W; Almqvist C; Henderson AJ; Melén E; Duijts L; Koppelman GH; London SJ, 2018. Epigenome-wide Meta-analysis of DNA Methylation and Childhood Asthma. J Allergy Clin Immunol.
  4. Messenger ZJ; Hall JR; Jima DD; House JS; Tam HW; Tokarz DA; Smart RC, 2018. C/EBPβ deletion in oncogenic Ras skin tumors is a synthetic lethal event.  Cell Death Dis 9(11):1054
  5. Frayling TM; Beaumont RN; Jones SE; Yaghootkar H; Tuke MA; Ruth KS; Casanova F; West B; Locke J; Sharp S; Ji Y; Thompson W; Harrison J; Etheridge AS; Gallins PJ; Jima D; Wright F; Zhou Y; Innocenti F; Lindgren CM; Grarup N; Murray A; Freathy RM; Weedon MN; Tyrrell J; Wood AR, 2018. A Common Allele in FGF21 Associated with Sugar Intake Is Associated with Body Shape, Lower Total Body-Fat Percentage, and Higher Blood Pressure.  Cell Rep 23(2):327-336
  6. Hsuan Chou, Wimal Pathmasiri, Jocelin Deese-spruill, Susan J. Sumner, Dereje D. Jima, David H. Funk, John K. Jackson, Bernard W. Sweeney and David B. Buchwalter, 2018. The Good, the Bad, and the Lethal: Gene Expression and Metabolomics Reveal Physiological Mechanisms Underlying Chronic Thermal Effects in Mayfly Larvae (Neocloeon triangulifer).  Front. Ecol. Evol. 23 March 2018
  7. Cowley M; Skaar DA; Jima DD; Maguire RL; Hudson KM; Park SS; Sorrow P; Hoyo C, 2018. Effects of Cadmium Exposure on DNA Methylation at Imprinting Control Regions and Genome-Wide in Mothers and Newborn Children.  Environ Health Perspect 126(3):037003
  8. Li G; Jima D; Wright FA; Nobel AB, 2018. HT-eQTL: integrative expression quantitative trait loci analysis in a large number of human tissues.  BMC Bioinformatics 19(1):95
  9. Baldwin KR; Horman B; Phillips AL; McRitchie SL; Watson S; Deese-Spruill J; Jima D; Sumner S; Stapleton H; Patisaul H, 2018. EDC IMPACT: Molecular effects of developmental FM 550 exposure in Wistar rat placenta and fetal forebrain.  Endocr Connect.

  10. Lee S; Ward TJ; Jima DD; Parsons C; Kathariou S, 2017. The Arsenic Resistance-Associated Listeria Genomic Island LGI2 Exhibits Sequence and Integration Site Diversity and a Propensity for Three Listeria monocytogenes Clones with Enhanced Virulence.  Appl Environ Microbiol 83.

  11. Dutta V; Lee S; Ward TJ; Orwig N; Altermann E; Jima DD; Parsons C; Kathariou S, 2017. Genome Sequences of Listeria monocytogenes Strains with Resistance to Arsenic.  Genome Announc 5.

  12. Grossman L; Chang C; Dai J; Nikitin PA; Jima DD; Dave SS; Luftig MA, 2017. Epstein-Barr Virus Induces Adhesion Receptor CD226 (DNAM-1) Expression during Primary B-Cell Transformation into Lymphoblastoid Cell Lines.  mSphere 2.

  13. Zhou YH; Cichocki JA; Soldatow VY; Scholl EH; Gallins PJ; Jima D; Yoo HS; Chiu WA; Wright FA; Rusyn I, 2017. Editor’s Highlight: Comparative Dose-Response Analysis of Liver and Kidney Transcriptomic Effects of Trichloroethylene and Tetrachloroethylene in B6C3F1 Mouse.  Toxicol Sci 160(1):95-110

  14. Tokarz DA; Heffelfinger AK; Jima DD; Gerlach J; Shah RN; Rodriguez-Nunez I; Kortum AN; Fletcher AA; Nordone SK; Law JM; Heber S; Yoder JA, 2017. Disruption of Trim9 function abrogates macrophage motility in vivo.  J Leukoc Biol102(6):1371-1380

  15. House JS; Grimm FA; Jima DD; Zhou YH; Rusyn I; Wright FA, 2017. A Pipeline for High-Throughput Concentration Response Modeling of Gene Expression for Toxicogenomics.  Front Genet 8:168

  16. Reaves DK; Hoadley KA; Fagan-Solis KD; Jima DD; Bereman M; Thorpe L; Hicks J; McDonald D; Troester MA; Perou CM; Fleming JM, 2017. Nuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis.  Mol Cancer Res 15(2):165-178

  17. Arambula SE; Jima D; Patisaul HB, 2017. Prenatal bisphenol A (BPA) exposure alters the transcriptome of the neonate rat amygdala in a sex-specific manner: a CLARITY-BPA consortium study.  Neurotoxicology.

  18. Felix JF; Joubert BR; Baccarelli AA; Sharp GC; Almqvist C; Annesi-Maesano I; Arshad H; Baïz N; Bakermans-Kranenburg MJ; Bakulski KM; Binder EB; Bouchard L; Breton CV; Brunekreef B; Brunst KJ; Burchard EG; Bustamante M; Chatzi L; Cheng Munthe-Kaas M; Corpeleijn E; Czamara D; Dabelea D; Davey Smith G; De Boever P; Duijts L; Dwyer T; Eng C; Eskenazi B; Everson TM; Falahi F; Fallin MD; Farchi S; Fernandez MF; Gao L; Gaunt TR; Ghantous A; Gillman MW; Gonseth S; Grote V; Gruzieva O; Håberg SE; Herceg Z; Hivert MF; Holland N; Holloway JW; Hoyo C; Hu D; Huang RC; Huen K; Järvelin MR; Jima DD; Just AC; Karagas MR; Karlsson R; Karmaus W; Kechris KJ; Kere J; Kogevinas M; Koletzko B; Koppelman GH; Küpers LK; Ladd-Acosta C; Lahti J; Lambrechts N; Langie SAS; Lie RT; Liu AH; Magnus MC; Magnus P; Maguire RL; Marsit CJ; McArdle W; Melén E; Melton P; Murphy SK; Nawrot TS; Nisticò L; Nohr EA; Nordlund B; Nystad W; Oh SS; Oken E; Page CM; Perron P; Pershagen G; Pizzi C; Plusquin M; Raikkonen K; Reese SE; Reischl E; Richiardi L; Ring S; Roy RP; Rzehak P; Schoeters G; Schwartz DA; Sebert S; Snieder H; Sørensen TIA; Starling AP; Sunyer J; Taylor JA; Tiemeier H; Ullemar V; Vafeiadi M; Van Ijzendoorn MH; Vonk JM; Vriens A; Vrijheid M; Wang P; Wiemels JL; Wilcox AJ; Wright RJ; Xu CJ; Xu Z; Yang IV; Yousefi P; Zhang H; Zhang W; Zhao S; Agha G; Relton CL; Jaddoe VWV; London SJ, 2017. Cohort Profile: Pregnancy And Childhood Epigenetics (PACE) Consortium.  Int J Epidemiol.

  19. Maina AN; Luce-Fedrow A; Omulo S; Hang J; Chan TC; Ade F; Jima DD; Ogola E; Ge H; Breiman RF; Njenga MK; Richards AL, 2016. Isolation and characterization of a novel Rickettsia species (Rickettsia asembonensis sp. nov.) obtained from cat fleas (Ctenocephalides felis).  Int J Syst Evol Microbiol 66(11):4512-4517

  20. Hang J; Klein TA; Kim HC; Yang Y; Jima DD; Richardson JH; Jarman RG, 2016. Genome Sequences of Five Arboviruses in Field-Captured Mosquitoes in a Unique Rural Environment of South Korea.  Genome Announc 4.

  21. Dutta V; Lee S; Ward TJ; Orwig N; Altermann E; Jima D; Parsons C; Kathariou S, 2016. Draft Genome Sequences of Two Historical Listeria monocytogenes Strains from Human Listeriosis Cases in 1933.  Genome Announc 4.

  22. Nye MD; King KE; Darrah TH; Maguire R; Jima DD; Huang Z; Mendez MA; Fry RC; Jirtle RL; Murphy SK; Hoyo C, 2016. Maternal blood lead concentrations, DNA methylation of MEG3 DMR regulating the DLK1/MEG3 imprinted domain and early growth in a multiethnic cohort.  Environ Epigenet 2.

  23. Jima DD; Luce-Fedrow A; Yang Y; Maina AN; Snesrud EC; Otiang E; Njenga K; Jarman RG; Richards AL; Hang J, 2015. Whole-Genome Sequence of “Candidatus Rickettsia asemboensis” Strain NMRCii, Isolated from Fleas of Western Kenya. Genome Announc 3.

  24. Doss JF; Corcoran DL; Jima DD; Telen MJ; Dave SS; Chi JT, 2015. A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes.  BMC Genomics 16:952

  25. Kilianski A; Carcel P; Yao S; Roth P; Schulte J; Donarum GB; Fochler ET; Hill JM; Liem AT; Wiley MR; Ladner JT; Pfeffer BP; Elliot O; Petrosov A; Jima DD; Vallard TG; Melendrez MC; Skowronski E; Quan PL; Lipkin WI; Gibbons HS; Hirschberg DL; Palacios GF; Rosenzweig CN, 2015. Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform.  BMC Bioinformatics 16:416

  26. Zhang J; Jima D; Moffitt AB; Liu Q; Czader M; Hsi ED; Fedoriw Y; Dunphy CH; Richards KL; Gill JI; Sun Z; Love C; Scotland P; Lock E; Levy S; Hsu DS; Dunson D; Dave SS, 2014. The genomic landscape of mantle cell lymphoma is related to the epigenetically determined chromatin state of normal B cells.  Blood 123(19):2988-96

  27. Zhang J; Grubor V; Love CL; Banerjee A; Richards KL; Mieczkowski PA; Dunphy C; Choi W; Au WY; Srivastava G; Lugar PL; Rizzieri DA; Lagoo AS; Bernal-Mizrachi L; Mann KP; Flowers C; Naresh K; Evens A; Gordon LI; Czader M; Gill JI; Hsi ED; Liu Q; Fan A; Walsh K; Jima D; Smith LL; Johnson AJ; Byrd JC; Luftig MA; Ni T; Zhu J; Chadburn A; Levy S; Dunson D; Dave SS, 2013. Genetic heterogeneity of diffuse large B-cell lymphoma.  Proc Natl Acad Sci U S A 110(4):1398-403

  28. Walsh K; McKinney MS; Love C; Liu Q; Fan A; Patel A; Smith J; Beaven A; Jima DD; Dave SS, 2013. PAK1 mediates resistance to PI3K inhibition in lymphomas.  Clin Cancer Res 19(5):1106-15

  29. Forte E; Salinas RE; Chang C; Zhou T; Linnstaedt SD; Gottwein E; Jacobs C; Jima D; Li QJ; Dave SS; Luftig MA, 2012. The Epstein-Barr virus (EBV)-induced tumor suppressor microRNA MiR-34a is growth promoting in EBV-infected B cells.  J Virol 86(12):6889-98

  30. Love C; Sun Z; Jima D; Li G; Zhang J; Miles R; Richards KL; Dunphy CH; Choi WW; Srivastava G; Lugar PL; Rizzieri DA; Lagoo AS; Bernal-Mizrachi L; Mann KP; Flowers CR; Naresh KN; Evens AM; Chadburn A; Gordon LI; Czader MB; Gill JI; Hsi ED; Greenough A; Moffitt AB; McKinney M; Banerjee A; Grubor V; Levy S; Dunson DB; Dave SS, 2012. The genetic landscape of mutations in Burkitt lymphoma.  Nat Genet 44(12):1321-5

  31. Jima DD; Zhang J; Jacobs C; Richards KL; Dunphy CH; Choi WW; Au WY; Srivastava G; Czader MB; Rizzieri DA; Lagoo AS; Lugar PL; Mann KP; Flowers CR; Bernal-Mizrachi L; Naresh KN; Evens AM; Gordon LI; Luftig M; Friedman DR; Weinberg JB; Thompson MA; Gill JI; Liu Q; How T; Grubor V; Gao Y; Patel A; Wu H; Zhu J; Blobe GC; Lipsky PE; Chadburn A; Dave SS, 2010. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs.  Blood 116(23):e118-27

  32. Longo NS; Lugar PL; Yavuz S; Zhang W; Krijger PH; Russ DE; Jima DD; Dave SS; Grammer AC; Lipsky PE, 2009. Analysis of somatic hypermutation in X-linked hyper-IgM syndrome shows specific deficiencies in mutational targeting.  Blood113(16):3706-15

  33. Jima DD; Shah RN; Orcutt TM; Joshi D; Law JM; Litman GW; Trede NS; Yoder JA, 2009. Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity.  Mol Immunol 46(7):1505-16

  34. Zhang J; Jima DD; Jacobs C; Fischer R; Gottwein E; Huang G; Lugar PL; Lagoo AS; Rizzieri DA; Friedman DR; Weinberg JB; Lipsky PE; Dave SS, 2009. Patterns of microRNA expression characterize stages of human B-cell differentiation.  Blood113(19):4586-94