Publications

  1. Küpers LK, Monnereau C, Sharp GC, Yousefi P, Salas LA, Ghantous A, Page CM, Reese SE, Wilcox AJ, Czamara D, Starling AP, Novoloaca A, Lent S, Roy R, Hoyo C, Breton CV, Allard C, Just AC, Bakulski KM, Holloway JW, Everson TM, Xu CJ, Huang RC, van der Plaat DA, Wielscher M, Merid SK, Ullemar V, Rezwan FI, Lahti J, van Dongen J, Langie SAS, Richardson TG, Magnus MC, Nohr EA, Xu Z, Duijts L, Zhao S, Zhang W, Plusquin M, DeMeo DL, Solomon O, Heimovaara JH, Jima DD, Gao L, Bustamante M, Perron P, Wright RO, Hertz-Picciotto I, Zhang H, Karagas MR, Gehring U, Marsit CJ, Beilin LJ, Vonk JM, Jarvelin MR, Bergström A, Örtqvist AK, Ewart S, Villa PM, Moore SE, Willemsen G, Standaert ARL, Håberg SE, Sørensen TIA, Taylor JA, Räikkönen K, Yang IV, Kechris K, Nawrot TS, Silver MJ, Gong YY, Richiardi L, Kogevinas M, Litonjua AA, Eskenazi B, Huen K, Mbarek H, Maguire RL, Dwyer T, Vrijheid M, Bouchard L, Baccarelli AA, Croen LA, Karmaus W, Anderson D, de Vries M, Sebert S, Kere J, Karlsson R, Arshad SH, Hämäläinen E, Routledge MN, Boomsma DI, Feinberg AP, Newschaffer CJ, Govarts E, Moisse M, Fallin MD, Melén E, Prentice AM, Kajantie E, Almqvist C, Oken E, Dabelea D, Boezen HM, Melton PE, Wright RJ, Koppelman GH, Trevisi L, Hivert MF, Sunyer J, Munthe-Kaas MC, Murphy SK, Corpeleijn E, Wiemels J, Holland N, Herceg Z, Binder EB, Davey Smith G, Jaddoe VWV, Lie RT, Nystad W, London SJ, Lawlor DA, Relton CL, Snieder H, Felix JF. Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight. Nat Commun. 2019 Apr 23;10(1):1893. doi: 10.1038/s41467-019-09671-3.
  2. Martin CL; Jima D; Sharp GC; McCullough LE; Park SS; Gowdy KM; Skaar D; Cowley M; Maguire RL; Fuemmeler B; Collier D; Relton CL; Murphy SK; Hoyo C, 2019. Maternal pre-pregnancy obesity, offspring cord blood DNA methylation, and offspring cardiometabolic health in early childhood: an epigenome-wide association study. Epigenetics.
  3. Tam HW; Hall JR; Messenger ZJ; Jima DD; House JS; Linder K; Smart RC, 2019. C/EBPβ Suppresses Keratinocyte Autonomous Type 1 IFN Response and p53 to Increase Cell Survival and Susceptibility to UVB-induced Skin Cancer.  Carcinogenesis.
  4. Reese SE; Xu CJ; den Dekker HT; Lee MK; Sikdar S; Ruiz-Arenas C; Merid SK; Rezwan FI; Page CM; Ullemar V; Melton PE; Oh SS; Yang IV; Burrows K; Söderhäll C; Jima DD; Gao L; Arathimos R; Küpers LK; Wielscher M; Rzehak P; Lahti J; Laprise C; Madore AM; Ward J; Bennett BD; Wang T; Bell DA; Vonk JM; Håberg SE; Zhao S; Karlsson R; Hollams E; Hu D; Richards AJ; Bergström A; Sharp GC; Felix JF; Bustamante M; Gruzieva O; Maguire RL; Gilliland F; Baïz N; Nohr EA; Corpeleijn E; Sebert S; Karmaus W; Grote V; Kajantie E; Magnus MC; Örtqvist AK; Eng C; Liu AH; Kull I; Jaddoe VWV; Sunyer J; Kere J; Hoyo C; Annesi-Maesano I; Arshad SH; Koletzko B; Brunekreef B; Binder EB; Räikkönen K; Reischl E; Holloway JW; Jarvelin MR; Snieder H; Kazmi N; Breton CV; Murphy SK; Pershagen G; Anto JM; Relton CL; Schwartz DA; Burchard EG; Huang RC; Nystad W; Almqvist C; Henderson AJ; Melén E; Duijts L; Koppelman GH; London SJ, 2018. Epigenome-wide Meta-analysis of DNA Methylation and Childhood Asthma. J Allergy Clin Immunol.
  5. Messenger ZJ; Hall JR; Jima DD; House JS; Tam HW; Tokarz DA; Smart RC, 2018. C/EBPβ deletion in oncogenic Ras skin tumors is a synthetic lethal event.  Cell Death Dis 9(11):1054
  6. Frayling TM; Beaumont RN; Jones SE; Yaghootkar H; Tuke MA; Ruth KS; Casanova F; West B; Locke J; Sharp S; Ji Y; Thompson W; Harrison J; Etheridge AS; Gallins PJ; Jima D; Wright F; Zhou Y; Innocenti F; Lindgren CM; Grarup N; Murray A; Freathy RM; Weedon MN; Tyrrell J; Wood AR, 2018. A Common Allele in FGF21 Associated with Sugar Intake Is Associated with Body Shape, Lower Total Body-Fat Percentage, and Higher Blood Pressure.  Cell Rep 23(2):327-336
  7. Hsuan Chou, Wimal Pathmasiri, Jocelin Deese-spruill, Susan J. Sumner, Dereje D. Jima, David H. Funk, John K. Jackson, Bernard W. Sweeney and David B. Buchwalter, 2018. The Good, the Bad, and the Lethal: Gene Expression and Metabolomics Reveal Physiological Mechanisms Underlying Chronic Thermal Effects in Mayfly Larvae (Neocloeon triangulifer).  Front. Ecol. Evol. 23 March 2018
  8. Cowley M; Skaar DA; Jima DD; Maguire RL; Hudson KM; Park SS; Sorrow P; Hoyo C, 2018. Effects of Cadmium Exposure on DNA Methylation at Imprinting Control Regions and Genome-Wide in Mothers and Newborn Children.  Environ Health Perspect 126(3):037003
  9. Li G; Jima D; Wright FA; Nobel AB, 2018. HT-eQTL: integrative expression quantitative trait loci analysis in a large number of human tissues.  BMC Bioinformatics 19(1):95
  10. Baldwin KR; Horman B; Phillips AL; McRitchie SL; Watson S; Deese-Spruill J; Jima D; Sumner S; Stapleton H; Patisaul H, 2018. EDC IMPACT: Molecular effects of developmental FM 550 exposure in Wistar rat placenta and fetal forebrain.  Endocr Connect.

  11. Lee S; Ward TJ; Jima DD; Parsons C; Kathariou S, 2017. The Arsenic Resistance-Associated Listeria Genomic Island LGI2 Exhibits Sequence and Integration Site Diversity and a Propensity for Three Listeria monocytogenes Clones with Enhanced Virulence.  Appl Environ Microbiol 83.

  12. Dutta V; Lee S; Ward TJ; Orwig N; Altermann E; Jima DD; Parsons C; Kathariou S, 2017. Genome Sequences of Listeria monocytogenes Strains with Resistance to Arsenic.  Genome Announc 5.

  13. Grossman L; Chang C; Dai J; Nikitin PA; Jima DD; Dave SS; Luftig MA, 2017. Epstein-Barr Virus Induces Adhesion Receptor CD226 (DNAM-1) Expression during Primary B-Cell Transformation into Lymphoblastoid Cell Lines.  mSphere 2.

  14. Zhou YH; Cichocki JA; Soldatow VY; Scholl EH; Gallins PJ; Jima D; Yoo HS; Chiu WA; Wright FA; Rusyn I, 2017. Editor’s Highlight: Comparative Dose-Response Analysis of Liver and Kidney Transcriptomic Effects of Trichloroethylene and Tetrachloroethylene in B6C3F1 Mouse.  Toxicol Sci 160(1):95-110

  15. Tokarz DA; Heffelfinger AK; Jima DD; Gerlach J; Shah RN; Rodriguez-Nunez I; Kortum AN; Fletcher AA; Nordone SK; Law JM; Heber S; Yoder JA, 2017. Disruption of Trim9 function abrogates macrophage motility in vivo.  J Leukoc Biol102(6):1371-1380

  16. House JS; Grimm FA; Jima DD; Zhou YH; Rusyn I; Wright FA, 2017. A Pipeline for High-Throughput Concentration Response Modeling of Gene Expression for Toxicogenomics.  Front Genet 8:168

  17. Reaves DK; Hoadley KA; Fagan-Solis KD; Jima DD; Bereman M; Thorpe L; Hicks J; McDonald D; Troester MA; Perou CM; Fleming JM, 2017. Nuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis.  Mol Cancer Res 15(2):165-178

  18. Arambula SE; Jima D; Patisaul HB, 2017. Prenatal bisphenol A (BPA) exposure alters the transcriptome of the neonate rat amygdala in a sex-specific manner: a CLARITY-BPA consortium study.  Neurotoxicology.

  19. Felix JF; Joubert BR; Baccarelli AA; Sharp GC; Almqvist C; Annesi-Maesano I; Arshad H; Baïz N; Bakermans-Kranenburg MJ; Bakulski KM; Binder EB; Bouchard L; Breton CV; Brunekreef B; Brunst KJ; Burchard EG; Bustamante M; Chatzi L; Cheng Munthe-Kaas M; Corpeleijn E; Czamara D; Dabelea D; Davey Smith G; De Boever P; Duijts L; Dwyer T; Eng C; Eskenazi B; Everson TM; Falahi F; Fallin MD; Farchi S; Fernandez MF; Gao L; Gaunt TR; Ghantous A; Gillman MW; Gonseth S; Grote V; Gruzieva O; Håberg SE; Herceg Z; Hivert MF; Holland N; Holloway JW; Hoyo C; Hu D; Huang RC; Huen K; Järvelin MR; Jima DD; Just AC; Karagas MR; Karlsson R; Karmaus W; Kechris KJ; Kere J; Kogevinas M; Koletzko B; Koppelman GH; Küpers LK; Ladd-Acosta C; Lahti J; Lambrechts N; Langie SAS; Lie RT; Liu AH; Magnus MC; Magnus P; Maguire RL; Marsit CJ; McArdle W; Melén E; Melton P; Murphy SK; Nawrot TS; Nisticò L; Nohr EA; Nordlund B; Nystad W; Oh SS; Oken E; Page CM; Perron P; Pershagen G; Pizzi C; Plusquin M; Raikkonen K; Reese SE; Reischl E; Richiardi L; Ring S; Roy RP; Rzehak P; Schoeters G; Schwartz DA; Sebert S; Snieder H; Sørensen TIA; Starling AP; Sunyer J; Taylor JA; Tiemeier H; Ullemar V; Vafeiadi M; Van Ijzendoorn MH; Vonk JM; Vriens A; Vrijheid M; Wang P; Wiemels JL; Wilcox AJ; Wright RJ; Xu CJ; Xu Z; Yang IV; Yousefi P; Zhang H; Zhang W; Zhao S; Agha G; Relton CL; Jaddoe VWV; London SJ, 2017. Cohort Profile: Pregnancy And Childhood Epigenetics (PACE) Consortium.  Int J Epidemiol.

  20. Maina AN; Luce-Fedrow A; Omulo S; Hang J; Chan TC; Ade F; Jima DD; Ogola E; Ge H; Breiman RF; Njenga MK; Richards AL, 2016. Isolation and characterization of a novel Rickettsia species (Rickettsia asembonensis sp. nov.) obtained from cat fleas (Ctenocephalides felis).  Int J Syst Evol Microbiol 66(11):4512-4517

  21. Hang J; Klein TA; Kim HC; Yang Y; Jima DD; Richardson JH; Jarman RG, 2016. Genome Sequences of Five Arboviruses in Field-Captured Mosquitoes in a Unique Rural Environment of South Korea.  Genome Announc 4.

  22. Dutta V; Lee S; Ward TJ; Orwig N; Altermann E; Jima D; Parsons C; Kathariou S, 2016. Draft Genome Sequences of Two Historical Listeria monocytogenes Strains from Human Listeriosis Cases in 1933.  Genome Announc 4.

  23. Nye MD; King KE; Darrah TH; Maguire R; Jima DD; Huang Z; Mendez MA; Fry RC; Jirtle RL; Murphy SK; Hoyo C, 2016. Maternal blood lead concentrations, DNA methylation of MEG3 DMR regulating the DLK1/MEG3 imprinted domain and early growth in a multiethnic cohort.  Environ Epigenet 2.

  24. Jima DD; Luce-Fedrow A; Yang Y; Maina AN; Snesrud EC; Otiang E; Njenga K; Jarman RG; Richards AL; Hang J, 2015. Whole-Genome Sequence of “Candidatus Rickettsia asemboensis” Strain NMRCii, Isolated from Fleas of Western Kenya. Genome Announc 3.

  25. Doss JF; Corcoran DL; Jima DD; Telen MJ; Dave SS; Chi JT, 2015. A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes.  BMC Genomics 16:952

  26. Kilianski A; Carcel P; Yao S; Roth P; Schulte J; Donarum GB; Fochler ET; Hill JM; Liem AT; Wiley MR; Ladner JT; Pfeffer BP; Elliot O; Petrosov A; Jima DD; Vallard TG; Melendrez MC; Skowronski E; Quan PL; Lipkin WI; Gibbons HS; Hirschberg DL; Palacios GF; Rosenzweig CN, 2015. Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform.  BMC Bioinformatics 16:416

  27. Zhang J; Jima D; Moffitt AB; Liu Q; Czader M; Hsi ED; Fedoriw Y; Dunphy CH; Richards KL; Gill JI; Sun Z; Love C; Scotland P; Lock E; Levy S; Hsu DS; Dunson D; Dave SS, 2014. The genomic landscape of mantle cell lymphoma is related to the epigenetically determined chromatin state of normal B cells.  Blood 123(19):2988-96

  28. Zhang J; Grubor V; Love CL; Banerjee A; Richards KL; Mieczkowski PA; Dunphy C; Choi W; Au WY; Srivastava G; Lugar PL; Rizzieri DA; Lagoo AS; Bernal-Mizrachi L; Mann KP; Flowers C; Naresh K; Evens A; Gordon LI; Czader M; Gill JI; Hsi ED; Liu Q; Fan A; Walsh K; Jima D; Smith LL; Johnson AJ; Byrd JC; Luftig MA; Ni T; Zhu J; Chadburn A; Levy S; Dunson D; Dave SS, 2013. Genetic heterogeneity of diffuse large B-cell lymphoma.  Proc Natl Acad Sci U S A 110(4):1398-403

  29. Walsh K; McKinney MS; Love C; Liu Q; Fan A; Patel A; Smith J; Beaven A; Jima DD; Dave SS, 2013. PAK1 mediates resistance to PI3K inhibition in lymphomas.  Clin Cancer Res 19(5):1106-15

  30. Forte E; Salinas RE; Chang C; Zhou T; Linnstaedt SD; Gottwein E; Jacobs C; Jima D; Li QJ; Dave SS; Luftig MA, 2012. The Epstein-Barr virus (EBV)-induced tumor suppressor microRNA MiR-34a is growth promoting in EBV-infected B cells.  J Virol 86(12):6889-98

  31. Love C; Sun Z; Jima D; Li G; Zhang J; Miles R; Richards KL; Dunphy CH; Choi WW; Srivastava G; Lugar PL; Rizzieri DA; Lagoo AS; Bernal-Mizrachi L; Mann KP; Flowers CR; Naresh KN; Evens AM; Chadburn A; Gordon LI; Czader MB; Gill JI; Hsi ED; Greenough A; Moffitt AB; McKinney M; Banerjee A; Grubor V; Levy S; Dunson DB; Dave SS, 2012. The genetic landscape of mutations in Burkitt lymphoma.  Nat Genet 44(12):1321-5

  32. Jima DD; Zhang J; Jacobs C; Richards KL; Dunphy CH; Choi WW; Au WY; Srivastava G; Czader MB; Rizzieri DA; Lagoo AS; Lugar PL; Mann KP; Flowers CR; Bernal-Mizrachi L; Naresh KN; Evens AM; Gordon LI; Luftig M; Friedman DR; Weinberg JB; Thompson MA; Gill JI; Liu Q; How T; Grubor V; Gao Y; Patel A; Wu H; Zhu J; Blobe GC; Lipsky PE; Chadburn A; Dave SS, 2010. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs.  Blood 116(23):e118-27

  33. Longo NS; Lugar PL; Yavuz S; Zhang W; Krijger PH; Russ DE; Jima DD; Dave SS; Grammer AC; Lipsky PE, 2009. Analysis of somatic hypermutation in X-linked hyper-IgM syndrome shows specific deficiencies in mutational targeting.  Blood113(16):3706-15

  34. Jima DD; Shah RN; Orcutt TM; Joshi D; Law JM; Litman GW; Trede NS; Yoder JA, 2009. Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity.  Mol Immunol 46(7):1505-16

  35. Zhang J; Jima DD; Jacobs C; Fischer R; Gottwein E; Huang G; Lugar PL; Lagoo AS; Rizzieri DA; Friedman DR; Weinberg JB; Lipsky PE; Dave SS, 2009. Patterns of microRNA expression characterize stages of human B-cell differentiation.  Blood113(19):4586-94