Recent Publications

1. Vikrant Dutta, Sangmi Lee, Todd J Ward, Nathane Orwig, Eric Altermann, Dereje Jima, Cameron Parsons, Sophia Kathariou (2016). Draft genome sequences of two historical Listeria monocytogenes strains from human listeriosis cases in 1933. Genome Announcements.
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2. Dereje D Jima, Alison Luce-Fedrow, Yu Yang, Alice N Maina, Erik C Snesrud, Elkanah Otiang, Kariuki Njenga, Richard G Jarman, Allen L Richards, Jun Hang (2015). Whole-genome sequence of “Candidatus Rickettsia asemboensis” strain NMRCii, isolated from fleas of western Kenya. Genome Announcements.
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3. Andy Kilianski, Patrick Carcel, Shijie Yao, Pierce Roth, Josh Schulte, Greg B Donarum, Ed T Fochler, Jessica M Hill, Alvin T Liem, Michael R Wiley, Others (2015). Pathosphere. org: pathogen detection and characterization through a web-based, open source informatics platform. BMC bioinformatics.
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4. Jennifer F Doss, David L Corcoran, Dereje D Jima, Marilyn J Telen, Sandeep S Dave, Jen-Tsan Chi (2015). A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes. BMC genomics.
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5. Jenny Zhang, Dereje Jima, Andrea B Moffitt, Qingquan Liu, Magdalena Czader, Eric D Hsi, Yuri Fedoriw, Cherie H Dunphy, Kristy L Richards, Javed I Gill, Others (2014). The genomic landscape of mantle cell lymphoma is related to the epigenetically determined chromatin state of normal B cells. Blood, The Journal of the American Society of Hematology.
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6. Adrienne Greenough, Andrea Moffitt, Dereje Jima, Jane Healy, Amee Patel, Kristy L Richards, Yuri D Fedoriw, Cherie Dunphy, William WL Choi, Gopesh Srivastava, Others (2014). Strand-specific total RNA sequencing establishes the complete transcriptome and alternative splicing repertoire in diffuse large B cell lymphoma. American Society of Hematology Washington, DC.
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7. Jia Li, Dereje Jima, Sandeep Dave, Yuan Zhuang (2014). Deletion of both Id2 and Id3 in developing T cell promotes NKT lymphoma formation in mice (TUM2P. 887). The Journal of Immunology.
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8. Matthew S McKinney, Anne W Beaven, Andrea Moffitt, Jason Landon Smith, Eric Lock, Dereje Jima, Jane Healy, Guojie Li, Adrienne Greenough, Cassandra L Love, Others (2014). Chemical genomics reveals JAK STAT activation as a mechanism of resistance to HDAC inhibitors in B cell lymphomas. American Society of Hematology Washington, DC.
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9. Katherine Walsh, Matthew S McKinney, Cassandra Love, Qingquan Liu, Alice Fan, Amee Patel, Jason Smith, Anne Beaven, Dereje D Jima, Sandeep S Dave (2013). PAK1 mediates resistance to PI3K inhibition in lymphomas. Clinical Cancer Research.
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10. Jenny Zhang, Vladimir Grubor, Cassandra L Love, Anjishnu Banerjee, Kristy L Richards, Piotr a Mieczkowski, Cherie Dunphy, William Choi, Wing Yan Au, Gopesh Srivastava, Others (2013). Genetic heterogeneity of diffuse large B-cell lymphoma. Proceedings of the National Academy of Sciences.
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